Lin4Neuro
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nisg=/media/sf_share/nisg-202001
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MacOS
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nisg=~/git/nisg-202001
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SUBJECTS_DIR=$nisg/subjects
cd $SUBJECTS_DIR/ernie
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cd mri
cat transforms/talairach.lta
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freeview -v T1.mgz \
aseg.presurf.mgz:colormap=lut
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freeview -v brainmask.mgz brain.mgz
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freeview -v brain.mgz \
wm.mgz:opacity=0.8:colormap=heat
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freeview -v wm.mgz filled.mgz
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cd .. # $SUBJECTS_DIR/ernie に移動
freeview -f surf/lh.orig.nofix \
-layout 3 -viewport 3d
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freeview -f surf/lh.smoothwm.nofix \
-layout 3 -viewport 3d
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freeview -f surf/lh.smoothwm.nofix \
surf/lh.inflated.nofix \
-layout 1 -viewport 3d
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mris_euler_number surf/lh.orig.nofix
mris_euler_number surf/lh.orig
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freeview -v mri/brain.mgz -f \
surf/lh.orig.nofix:edgecolor=yellow \
surf/lh.smoothwm:edgecolor=blue \
-layout 1 -viewport axial -zoom 3
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freeview -f surf/lh.inflated \
surf/lh.inflated:overlay=lh.sulc \
-layout 1 -viewport 3d
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freeview -v mri/brain.mgz \
-f surf/lh.smoothwm:overlay=lh.white.H \
-layout 2 -viewport sagittal
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less stats/lh.curv.stats
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